API for wwylab/DeMixT
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
| Global functions | |
|---|---|
| .onAttach | Source code |
| Alpha_search_2D | Source code |
| Alpha_search_2D_sigma | Source code |
| Alpha_search_MuT_2D | Source code |
| Alpha_search_Pi_2D | Source code |
| Alpha_search_SigmaT_2D | Source code |
| D1Loglikelihood_2D | Source code |
| D1Loglikelihood_log_2D | Source code |
| D1MuTSigmaT_Loglikelihood_2D | Source code |
| D1MuT_Loglikelihood_2D | Source code |
| D1Pi_Loglikelihood_2D | Source code |
| D1SigmaT_Loglikelihood_2D | Source code |
| D1f0MuT_func_2D | Source code |
| D1f0Pi_func_2D | Source code |
| D1f0SigmaT_func_2D | Source code |
| D2Loglikelihood_2D | Source code |
| D2Loglikelihood_log_2D | Source code |
| D2Loglikelihood_unit_2D | Source code |
| D2MuTSigmaT_inner_2D | Source code |
| D2MuTSigmaT_outer_2D | Source code |
| D2MuT_inner_2D | Source code |
| D2MuT_outer_2D | Source code |
| D2PiMuT_inner_2D | Source code |
| D2PiMuT_outer_2D | Source code |
| D2PiSigmaT_inner_2D | Source code |
| D2PiSigmaT_outer_2D | Source code |
| D2Pi_inner_2D | Source code |
| D2Pi_outer_2D | Source code |
| D2SigmaT_inner_2D | Source code |
| D2SigmaT_outer_2D | Source code |
| D2f0MuTSigmaT_func_2D | Source code |
| D2f0MuT_func_2D | Source code |
| D2f0PiMuT_func_2D | Source code |
| D2f0PiSigmaT_func_2D | Source code |
| D2f0Pi_func_2D | Source code |
| D2f0SigmaT_func_2D | Source code |
| DMuT_inner_2D | Source code |
| DMuT_outer_2D | Source code |
| DPi_inner_2D | Source code |
| DPi_outer_2D | Source code |
| DSigmaT_inner_2D | Source code |
| DSigmaT_outer_2D | Source code |
| DeMixT | Man page Source code |
| DeMixT_DE | Man page |
| DeMixT_GS | Man page Source code |
| DeMixT_S2 | Man page Source code |
| DeMixT_preprocessing | Man page Source code |
| Gfunc_2D_C | Source code |
| GoldenLine_search_2D | Source code |
| GoldenLine_search_MuT_2D | Source code |
| GoldenLine_search_Pi_2D | Source code |
| GoldenLine_search_SigmaT_2D | Source code |
| GoldenSection_Loglikelihood_MuT_2D | Source code |
| GoldenSection_Loglikelihood_Pi_2D | Source code |
| GoldenSection_Loglikelihood_SigmaT_2D | Source code |
| Gt | Source code |
| Gt_vec | Source code |
| Loglikelihood_2D | Source code |
| Loglikelihood_2D_L1 | Source code |
| Loglikelihood_MuT_2D | Source code |
| Loglikelihood_Pi_2D | Source code |
| Loglikelihood_SigmaT_2D | Source code |
| Loglikelihood_ft_y | Source code |
| Optimum_KernelC | Man page Source code |
| SoftThreshold | Source code |
| SoftThreshold_vec | Source code |
| Unit1 | Source code |
| batch_correction | Source code |
| detect_suspicious_sample_by_hierarchical_clustering_2comp | Source code |
| f0_func_2D | Source code |
| ft_y | Source code |
| innerCPP_2D | Source code |
| inner_trapez_2D | Source code |
| log_divide | Source code |
| mint | Source code |
| pf_y | Source code |
| plot_dim | Source code |
| plot_sd | Source code |
| pmin_y | Source code |
| scale_normalization_75th_percentile | Source code |
| simulate_2comp | Man page Source code |
| simulate_3comp | Man page Source code |
| subset_sd | Source code |
| subset_sd_gene_remaining | Source code |
| test.data.2comp | Man page |
| test.data.3comp | Man page |
| tf_y | Source code |
| tmin_y | Source code |
| tmin_y2 | Source code |
| x_update_2D | Source code |
| x_update_inv_2D | Source code |
