Man pages for wyguo/RTDBox
High resolution Transcriptome using Single Molecule PacBio Iso-seq data
| bed2gtf | Convert gtf file to bed12 file. |
| countReads | Transcript abundance analysis counts and count ratios |
| countSliding | Count the TSS or TES number in sliding window |
| DNArevComplement | Reverse complement of DNA |
| exon2intron | Get introns from exon coordinates |
| export_gtf | Export Granges object to gtf file |
| gtf2bed | Convert gtf file to bed12 file. |
| HCsite | Extract high confident transcript start or end site |
| makeGtfAttributes | Convert metadata information of a GRanges object to the... |
| matchGeneID | Match gene ids in the novel assembly to a reference |
| rowratio | Calculate column raito of a matrix or data frame based on a... |
| RTDfilter | Filter collasped transcript datasets |
| rtdMerge | Integrate the transcripts in the inference RTD to the... |
| SJanalysis | Splice Junction (SJ) analysis |
| SummaryTranSite | Summary transcript start site (TSS) and transcript end site... |
| TSanalysis | Transcript start site (TSS) and end site (TES) analysis |
