SummaryTranSite: Summary transcript start site (TSS) and transcript end site...
In wyguo/RTDBox: High resolution Transcriptome using Single Molecule PacBio Iso-seq data
View source: R/SummaryTranSite.R
SummaryTranSite R Documentation
Summary transcript start site (TSS) and transcript end site (TES)
Description
Summary transcript start site (TSS) and transcript end site (TES)
Usage
SummaryTranSite(gr, type = c("TSS", "TES"), bin = 5)
Arguments
gr
A GRanges object.
type
"TSS" for transcript start site and "TES" for transcript end site.
bin
An integer of window size to aggregate the reads upstream and downstream of a TSS/TES.
The total reads in [site-bin,site+bin] will be calculated.
Details
Count the number of TSS and TES on each chromosome.
Value
A data frame of TSS or TES count.
wyguo/RTDBox documentation built on Jan. 31, 2023, 1:19 a.m.
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View source: R/SummaryTranSite.R
| SummaryTranSite | R Documentation |
Summary transcript start site (TSS) and transcript end site (TES)
Description
Summary transcript start site (TSS) and transcript end site (TES)
Usage
SummaryTranSite(gr, type = c("TSS", "TES"), bin = 5)
Arguments
gr |
A GRanges object. |
type |
"TSS" for transcript start site and "TES" for transcript end site. |
bin |
An integer of window size to aggregate the reads upstream and downstream of a TSS/TES. The total reads in [site-bin,site+bin] will be calculated. |
Details
Count the number of TSS and TES on each chromosome.
Value
A data frame of TSS or TES count.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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