TSIS.data: Example datasets of TSIS.data.
In wyguo/TSIS: Time-series isoform switch of alternative splicing
TSIS.data R Documentation
Example datasets of TSIS.data.
Description
The TSIS package provides the example datasets "TSIS.data" with 30 genes and 140 isoforms, analyzed in 26 time points, each with 9 replicates.
The isoform expression is in TPM (transcript per million) format. Other type of transcript quantifications, such as read counts,
Percentage Splicing Ins (PSIs) can also be used in TSIS.
Usage
data(TSIS.data)
Format
An object of data list
Examples
names(TSIS.data)
##expression data
TSIS.data$data.exp[1:10,1:5]
##mapping data
TSIS.data$mapping[1:10,]
##subset of isoform names
TSIS.data$sub.isoforms[1:10]
wyguo/TSIS documentation built on May 21, 2023, 12:36 a.m.
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| TSIS.data | R Documentation |
Example datasets of TSIS.data.
Description
The TSIS package provides the example datasets "TSIS.data" with 30 genes and 140 isoforms, analyzed in 26 time points, each with 9 replicates. The isoform expression is in TPM (transcript per million) format. Other type of transcript quantifications, such as read counts, Percentage Splicing Ins (PSIs) can also be used in TSIS.
Usage
data(TSIS.data)
Format
An object of data list
Examples
names(TSIS.data)
##expression data
TSIS.data$data.exp[1:10,1:5]
##mapping data
TSIS.data$mapping[1:10,]
##subset of isoform names
TSIS.data$sub.isoforms[1:10]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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