Thank you for taking the time to participate in the survey. Your input is greatly appreciated and will help us to improve the 3D RNA-seq App and training.
https://forms.gle/SjV4PXCTAtoDytHS7
https://www.dropbox.com/s/8fsceneq8jlegwi/3D_RNAseq_example_data.zip?dl=0
Click “Download” and unzip, you will get three datasets:
Video tutorial: https://www.youtube.com/watch?v=rqeXECX1-T4
Or download example data from: https://www.dropbox.com/s/8fsceneq8jlegwi/3D_RNAseq_example_data.zip?dl=0
To see a demo video, click the screenshot
Alternative link on Bilibili: https://www.bilibili.com/video/BV1mS4y1g7uB/
library(rtracklayer)
file2read <- 'genomic.gtf' # mouse gtf
gtf <- import(file2read)
exon <- gtf[gtf$type=='exon']
mapping <- data.frame(TXNAME=exon$transcript_id,GENEID=exon$gene_id)
mapping <- unique(mapping)
write.csv(mapping,file='mapping.csv',row.names = F)
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