getMotifInfo: Generate PFMatrix or PFMatrixList from file.
In wzthu/ATACpipe: An Easy-to-use Systematic pipeline for ATACseq data analysis
getMotifInfo R Documentation
Generate PFMatrix or PFMatrixList from file.
Description
atacMotifScan and atacMotifScanPair accept PFM in a list, this
function convert JASPAR PFM file to PFMatrix or PFMatrixList.
Usage
getMotifInfo(motif.file = NULL)
Arguments
motif.file
Motif PFM file downloaded from JASPAR.
Details
Generate PFMatrix or PFMatrixList.
Value
PFMatrix or PFMatrixList.
Author(s)
Wei Zhang
Examples
motif_file <- system.file("extdata", "CustomizedMotif.txt", package="esATAC")
pfm <- getMotifInfo(motif.file = motif_file)
wzthu/ATACpipe documentation built on Aug. 12, 2022, 7:38 a.m.
R Package Documentation
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| getMotifInfo | R Documentation |
Generate PFMatrix or PFMatrixList from file.
Description
atacMotifScan and atacMotifScanPair accept PFM in a list, this
function convert JASPAR PFM file to PFMatrix or PFMatrixList.
Usage
getMotifInfo(motif.file = NULL)
Arguments
motif.file |
Motif PFM file downloaded from JASPAR. |
Details
Generate PFMatrix or PFMatrixList.
Value
PFMatrix or PFMatrixList.
Author(s)
Wei Zhang
Examples
motif_file <- system.file("extdata", "CustomizedMotif.txt", package="esATAC")
pfm <- getMotifInfo(motif.file = motif_file)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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