MultiRegionCutMatrix: MultiRegionCutMatrix

View source: R/scUtilities.R

MultiRegionCutMatrixR Documentation

MultiRegionCutMatrix

Description

Generate cut matrix for many regions

Usage

MultiRegionCutMatrix(
  object,
  regions,
  group.by = NULL,
  fragments = NULL,
  assay = NULL,
  cells = NULL,
  verbose = FALSE
)

Arguments

object

A Fragment object

regions

A set of GRanges

group.by

Name of grouping variable to use

fragments

A list of Fragment objects

assay

Name of the assay to use

cells

Vector of cells to include

verbose

Display messages

Details

Run CutMatrix on multiple regions and add them together. Assumes regions are pre-aligned.


wzthu/esATAC documentation built on Aug. 12, 2022, 7:41 a.m.