createPhenoTable: Create Phenotype Table

In xdomingoal/erah-devel: Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics

Create Phenotype Table

Description

Create table containing sample meta information such as as sample ID and class.

Usage

createPhenoTable(files, cls)

Arguments

files	File paths to experiment samples.
cls	Character vector containing sample classes.

Details

Creates phenotype information table based on experiment sample file paths and sample classes. Columns containing further information can also be added to this.

See Also

newExp createInstrumentalTable

Examples

## Not run: 
library(gcspikelite)
data(targets)

files <- list.files(system.file('data',package = 'gcspikelite'),full.names = TRUE)
files <- files[sapply(files,grepl,pattern = 'CDF')]

phenotype <- createPhenoTable(files,as.character(targets$Group[order(targets$FileName)]))

## End(Not run)

xdomingoal/erah-devel documentation built on Feb. 11, 2024, 11:11 a.m.