Man pages for xiamaz/flowProc
Flowcytometry data preprocessing tools
| CreateLapply | Parallelize functions with lapplies |
| FcsSelectMarkers | Reduce flowframe to specified set of marker channels. |
| FilterChannelMajority | Return flowframes with common channels and selected channels. |
| FilterEntries | Return boolean vector for a list based on filter |
| FilterEntry | Return bool for entry depending on whether it matches filter |
| FlowEntry-class | S4 class representing a flowframe with additional metadata |
| GetFile | Automatically check if file needs to be downloaded prior to... |
| GetFilepath | Get Filepath from FlowEntry |
| GetFiles | Get filenames in path |
| GroupBy | Group list by specific field |
| JsonToS4 | Convert list of data from json to S4 objects Keep grouping of... |
| MarkerOccurences | Get distribution of marker channels across whole dataset. |
| PathExists | Check if path exists |
| ProcessSingle | Load and filter single file info entry |
| PutFile | Automatically check if outputpath needs uploading to S3 |
| ReadDatasetJson | Read jSON info file with additional case metainformation |
| ReadFile | Load single fcs file into a file matrix |
| RemoveDuplicates | Remove duplicates with same filename from file matrix. |
| RemoveMarginal | Remove marginal cells |
| RowToS4 | Convert a single case row to a list of S4 objects for this... |
| TransformChannels | Transform flowcytometric marker channels. |
