CreateLapply | Parallelize functions with lapplies |
FcsSelectMarkers | Reduce flowframe to specified set of marker channels. |
FilterChannelMajority | Return flowframes with common channels and selected channels. |
FilterEntries | Return boolean vector for a list based on filter |
FilterEntry | Return bool for entry depending on whether it matches filter |
FlowEntry-class | S4 class representing a flowframe with additional metadata |
GetFile | Automatically check if file needs to be downloaded prior to... |
GetFilepath | Get Filepath from FlowEntry |
GetFiles | Get filenames in path |
GroupBy | Group list by specific field |
JsonToS4 | Convert list of data from json to S4 objects Keep grouping of... |
MarkerOccurences | Get distribution of marker channels across whole dataset. |
PathExists | Check if path exists |
ProcessSingle | Load and filter single file info entry |
PutFile | Automatically check if outputpath needs uploading to S3 |
ReadDatasetJson | Read jSON info file with additional case metainformation |
ReadFile | Load single fcs file into a file matrix |
RemoveDuplicates | Remove duplicates with same filename from file matrix. |
RemoveMarginal | Remove marginal cells |
RowToS4 | Convert a single case row to a list of S4 objects for this... |
TransformChannels | Transform flowcytometric marker channels. |
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