read_qza: read the qza file, output of qiime2.

read_qzaR Documentation

read the qza file, output of qiime2.

Description

the function was designed to read the ouput of qiime2.

Usage

read_qza(qzafile, parallel = FALSE)

Arguments

qzafile

character, the format of file should be one of 'BIOMV210DirFmt', 'TSVTaxonomyDirectoryFormat', 'NewickDirectoryFormat' and 'DNASequencesDirectoryFormat'.

parallel

logical, whether parsing the taxonomy by multi-parallel, efault is FALSE.

Value

list contained one or multiple object of feature table, taxonomy table, tree and represent sequences.

Examples

## Not run: 
otuqzafile <- system.file("extdata", "table.qza",
                          package="MicrobiotaProcess")
otuqza <- read_qza(otuqzafile)
str(otuqza)

## End(Not run)

xiangpin/MicrobiotaProcess documentation built on July 24, 2024, 11:44 p.m.