Man pages for xiaoli0/samplyzer
| calZscore | Calculate z-score of a vector or QC metrics of a... |
| calZscore.default | Calculate z-score of a vector |
| calZscore.sampleDataset | Calculate z-scores of QC metrics of a SampleDataset |
| dim.sampleDataset | Show dimensions of sample dataset object |
| dot-bamQcMetr | default bam QC parameters from picard tools |
| dot-multiplotWithSharedLegend | Generate multiple plots with shared figure legend |
| dot-scatter | Produce a scatter plot from a data frame |
| flagSamples | Flag a sample |
| flagSamples.default | Flag a sample from a data frame |
| flagSamples.sampleDataset | Flag a sample from a sample data set |
| getAttr | Get attributes of an object |
| getAttr.sampleDataset | Get attributes of a SampleDataset |
| hasAttr | Check whether the sampleDataset has attributes provided |
| inferAncestry | Predict sample ancestry from genotype Principle Components |
| inferAncestry.default | Infer anestry with KNN |
| inferAncestry.sampleDataset | Infer sample ancestry |
| PCplots | Generate PC plot of an SampleDataset Object |
| sampleDataset | Sample dataset object |
| sampleQcPlot | Generate scatter plot of QC metrics according to samples |
| sampleQcPlot.default | Generate scatter plot of QC metrics |
| sampleQcPlot.sampleDataset | Generate a panel of sample QC plots across a list of... |
| save | Save an object to a specific format |
| save.sampleDataset | Write sample dataset to tsv, RDS or excel files with S3... |
| setAttr | Update a Sample Data Set |
| setAttr.sampleDataset | Set attributes of a sample dataset |
| sort.sampleDataset | Update index of sample dataset by different annotation... |
