calZscore | Calculate z-score of a vector or QC metrics of a... |
calZscore.default | Calculate z-score of a vector |
calZscore.sampleDataset | Calculate z-scores of QC metrics of a SampleDataset |
dim.sampleDataset | Show dimensions of sample dataset object |
dot-bamQcMetr | default bam QC parameters from picard tools |
dot-multiplotWithSharedLegend | Generate multiple plots with shared figure legend |
dot-scatter | Produce a scatter plot from a data frame |
flagSamples | Flag a sample |
flagSamples.default | Flag a sample from a data frame |
flagSamples.sampleDataset | Flag a sample from a sample data set |
getAttr | Get attributes of an object |
getAttr.sampleDataset | Get attributes of a SampleDataset |
hasAttr | Check whether the sampleDataset has attributes provided |
inferAncestry | Predict sample ancestry from genotype Principle Components |
inferAncestry.default | Infer anestry with KNN |
inferAncestry.sampleDataset | Infer sample ancestry |
PCplots | Generate PC plot of an SampleDataset Object |
sampleDataset | Sample dataset object |
sampleQcPlot | Generate scatter plot of QC metrics according to samples |
sampleQcPlot.default | Generate scatter plot of QC metrics |
sampleQcPlot.sampleDataset | Generate a panel of sample QC plots across a list of... |
save | Save an object to a specific format |
save.sampleDataset | Write sample dataset to tsv, RDS or excel files with S3... |
setAttr | Update a Sample Data Set |
setAttr.sampleDataset | Set attributes of a sample dataset |
sort.sampleDataset | Update index of sample dataset by different annotation... |
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