DAISIE_plot_age_diversity: Plot clade age against clade diversity.

In xieshu95/DAISIE_new: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Plots clade age against clade diversity for all clades for which colonisation time is known.

Usage

DAISIE_plot_age_diversity(
  island,
  title = "Clade age vs clade diversity",
  island_age = NA
)

Arguments

island	Island data object. Can be in DAISIE list format (see Galapagos_datalist and DAISIE_data_prep for examples) or in table format (see Galapagos_datatable for an example).
title	Title of the plot
island_age	Age of island in appropriate units. In DAISIE_plot_age_diversity and DAISIE_plot_island if island input is in table format, the age of the island must be specified. If island input is in DAISIE list format, this option will override the island age specified in the island list.

Details

R plot showing for each clade in the island object the time of colonisation and the diversity of the clade. Only clades for which colonisation time is known are plotted. Blue - endemic; black - non-endemic. C = number of independent colonisations on island, N = number of species on the island

Value

R plot.

Author(s)

Luis Valente

References

Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.

See Also

DAISIE_sim_constant_rate, DAISIE_sim_time_dependent, DAISIE_sim_constant_rate_shift, DAISIE_plot_island

Examples

### Plot Galapagos age-diversity for Galapagos dataset
utils::data(Galapagos_datalist)
DAISIE_plot_age_diversity(Galapagos_datalist)

xieshu95/DAISIE_new documentation built on March 20, 2020, 5:31 a.m.