Man pages for xihaoli/STAARpipeline
STAARpipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data
| Dynamic_Window_SCANG | Genetic region analysis of dynamic windows using SCANG-STAAR... |
| fit_nullmodel | Fitting generalized linear mixed model with known... |
| Gene_Centric_Coding | Gene-centric analysis of coding functional categories using... |
| Gene_Centric_Coding_cond | Gene-centric conditional analysis of coding functional... |
| Gene_Centric_Coding_cond_spa | Gene-centric conditional analysis of coding functional... |
| Gene_Centric_Noncoding | Gene-centric analysis of noncoding functional categories... |
| Gene_Centric_Noncoding_cond | Gene-centric conditional analysis of noncoding functional... |
| Gene_Centric_Noncoding_cond_spa | Gene-centric conditional analysis of noncoding functional... |
| genesis2staar_nullmodel | Transforming the null model object fitted using GENESIS to... |
| Individual_Analysis | Individual-variant analysis using score test |
| Individual_Analysis_cond | Individual-variant conditional analysis using score test |
| Individual_Analysis_cond_spa | Individual-variant conditional analysis using score test for... |
| LD_pruning | Linkage disequilibrium (LD) pruning procedure |
| ncRNA | Gene-centric analysis of long noncoding RNA (ncRNA) category... |
| ncRNA_cond | Gene-centric conditional analysis of long noncoding RNA... |
| ncRNA_cond_spa | Gene-centric conditional analysis of long noncoding RNA... |
| Sliding_Window | Genetic region analysis of sliding windows using STAAR... |
| Sliding_Window_cond | Genetic region conditional analysis of sliding windows using... |
| Sliding_Window_cond_spa | Genetic region conditional analysis of sliding windows using... |
| staar2scang_nullmodel | Transforming the null model object fitted using STAAR to the... |
