readFiles: 'readFiles' Read and Process MutSig files for plotting

In xindizhang/SigAct: A package for tracking mutational signatures over time

Description

readFiles This helper function for MutSig reads and processes files for plotting. Helper Function for MutSig.This function is based on the compute_signatures_for_all_examples function in compute_mutational_signatures.R and the read_mistures function from helper_functions.R. Please see reference at the top of this file

Usage

readFiles(sigActPoints, changepoints, phis)

Arguments

sigActPoints	absolute path of a CSV file of signature activities across pesudotime for each signature
changepoints	absolute path of a txt file containing the significant changepoints of signature activities
phis	absolute path of txt containing the pesudo-timeline

Value

A list constining data frame for signature activity points for plotting, a character vector with timepoint where signature activities changed significantly, and a vector of character indicated the number of mutant in each cancer cell for this simple, which will be use as the pesudo-timeline

xindizhang/SigAct documentation built on May 30, 2019, 11:47 p.m.