GEEMiHC.stat: GEEMiHC.stat

In xpjiang-ccnu/GEEMiHC: Detecting sparse microbial association signals from longitudinal microbiome data based on generalized estimating equations

GEEMiHC.stat

Description

The calculation for the test statistic of GEEHC (i.e., uGEEHC and wGEEHC) and its modulated versions.

Usage

GEEMiHC.stat(Zs, Gamma, Lamda, Ws=Ws)

Arguments

Zs	The marginal standardized score statistic for each OTU.
Gamma	A subset consists of the candidate modulation schema for lower sparsity levels. Default is Gamma=c(1,3,5,7,9).
Lamda	The weight factor for candidate modulation schema in Gamma. Default is the equal weight for each candidate modulation schema, i.e., Lamda = matrix(c(1, rep(0, 8), rep(1/3, 3), rep(0, 6), rep(1/5, 5), rep(0, 4), rep(1/7, 7), rep(0, 2), rep(1/9, 9)), 5, 9, byrow = T).
Ws	The weight factor for each OTU.

maxHC: The test statistic for GEEHC and its modulated versions.

GEEMiHC.stat(Zs=Zs, Gamma=c(1,3,5,7,9), Lamda=matrix(c(1, rep(0, 8), rep(1/3, 3), rep(0, 6), rep(1/5, 5), rep(0, 4), rep(1/7, 7), rep(0, 2), rep(1/9, 9)), 5, 9, byrow = T), Ws=Ws)

xpjiang-ccnu/GEEMiHC documentation built on May 15, 2023, 7:01 a.m.