Useful Miscellaneous Functions

autoParApply | *apply with auto-parallelization if available |

calcModifiedPeptideP | Calculate modified peptide probability |

constructModifiedPeptide | Construct the modified peptide sequence as a string |

diffdensity.plot | Plot the difference of densities between two distributions 1... |

elongate | Elongates a pseudo-wide column |

grapes-equals-grapes | Test for near equality of two vectors |

grapes-plus-grapes | Concatenate two character strings without any whitespace. |

guessCores | Guesses a number of CPU to use for parallel calls |

lettersToDecimal | Converts a letters-based representation into normal base 10... |

loadTo | Load to a list of environment Loads an R dataset written with... |

mktemp | Create a temporary file securely |

na.warn | Remove missing values with a warning This function behaves... |

pseudo.wide | A dummy data set in pseudo-wide format |

rank.normalize | Rank normalization |

setdiff_symmetric | Symmetric setdiff |

sparse.extract.index | Sparse indexing of matrices |

transformations | Transformations |

xavamess-package | Various useful functions |

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