Man pages for xthchen/haplotest
Haplotype based testing for evolve and resequence
| adapted.cmh.test.est | Adapted CMH test if all frequencies estimated with sampling... |
| adapted.cmh.test.est.pool | Adapted CMH test if all frequencies estimated with sampling... |
| adapted.cmh.test.str.true | Adapted CMH test if starting frequencies are known, other... |
| adapted.cmh.test.true | Adapted CMH test if all frequencies are known. |
| benef_sim | Generate the position of benefitial allele and selection... |
| Frequency_sim | Simulation of haploid haplotype frequencies over time. |
| hap_block | Selection of non-overlapping haplotype block from filtered... |
| hap_err_sim | Simulation of estimated haplotype frequencies with some... |
| haplotest | Testing for selection using temporal haplotype/allele... |
| Haplotype_sim | Simulate a haplotype structure matrix |
| hapnumtest | Iterative testing for the number of selected haplotypes. |
| hap_snp_red | Combination of haplotypes |
| merging_function | Vovk based multiple testing correction. |
| MIG | MIG algorithm for computation of haplotype blocks |
| normalised_LD | Computation of normalised linkage disequillibrium. |
| pair_test | Apply pairwise test to all pairs of haplotypes. |
