hap_err_sim: Simulation of estimated haplotype frequencies with some...
In xthchen/haplotest: Haplotype based testing for evolve and resequence
hap_err_sim R Documentation
Simulation of estimated haplotype frequencies with some sample size
Description
Noisy estimated haplotype frequencies are simulated assuming multinomial distribution with some sample size.
Usage
hap_err_sim(freq, samsize)
Arguments
freq
Numeric matrix, with each i,j element being the frequency of haplotype i at sequenced time point j.
samsize
Numeric vector or numeric. If numeric vector, a samplesize vector the same length as the ncol(freq). If numeric, the mean sample size, a poisson distribution will be used to determine the samplesize at different timepoints.
Value
A list, with the first item being the noisy frequency matrix, the second item the samplesize matrix.
See Also
haplotest()
xthchen/haplotest documentation built on Nov. 29, 2022, 12:07 p.m.
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| hap_err_sim | R Documentation |
Simulation of estimated haplotype frequencies with some sample size
Description
Noisy estimated haplotype frequencies are simulated assuming multinomial distribution with some sample size.
Usage
hap_err_sim(freq, samsize)
Arguments
freq |
Numeric matrix, with each i,j element being the frequency of haplotype i at sequenced time point j. |
samsize |
Numeric vector or numeric. If numeric vector, a samplesize vector the same length as the ncol(freq). If numeric, the mean sample size, a poisson distribution will be used to determine the samplesize at different timepoints. |
Value
A list, with the first item being the noisy frequency matrix, the second item the samplesize matrix.
See Also
haplotest()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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