Man pages for xtsvm/CancerSubtypes
Cancer subtypes identification, validation and visualization based on multiple genomic data sets

data.checkDistributionData check distribution
data.imputationData imputation
data.normalizationData normalization
DiffExp.limmaDiffExp.limma
drawHeatmapGenerate heatmaps
ExecuteCCExecute Consensus Clustering
ExecuteCNMFExecute Consensus NMF (Nonnegative matrix factorization)
ExecuteiClusterExecute iCluster (Integrative clustering of multiple genomic...
ExecuteSNFExecute SNF(Similarity Network Fusion )
ExecuteSNF.CCExecute the combined SNF (Similarity Network Fusion) and...
ExecuteWSNFExecute the WSNF(Weighted Similarity Network Fusion)
FSbyCoxBiological feature (such as gene) selection based on Cox...
FSbyMADBiological feature (such as gene) selection based on the most...
FSbyPCABiological feature (such as gene) dimension reduction and...
FSbyVarBiological feature (such as gene) selection based on the most...
GeneExpDataset: Gene expression
miRNAExpDataset: miRNA expression
RankingDataset: A default ranking of features for the fuction...
saveFigureThis function save the figure in the current plot.
sigclustTestA statistical method for testing the significance of...
silhouette_SimilarityMatrixCompute or Extract Silhouette Information from Clustering...
spectralAlgThis is an internal function but need to be exported for the...
statusDataset: Survival status
survAnalysisSurvival analysis(Survival curves, Log-rank test) and compute...
timeDataset: Survival time
xtsvm/CancerSubtypes documentation built on Aug. 12, 2017, 3:10 p.m.