calcFreqFromAd | Calculate the frequcy of Allele depth |
calcMissRatio | Calculate the missing ratio of each sample on all site |
callGtFromAd | call genotype from Allele depth by Frequency |
callWindowGeno | Call genotype by fix-size window |
export2cross | Generate cross object for R/qtl |
fixGenoError | Fix potential genotype error |
geno | Rice QTL genotype data |
getAdFromVcf | get the Allele depth from vcf |
pheno | Rice QTL phenotype data |
plotGenoHeatmap | genotype heatmap |
plotMarker | marker distribution in scaffold/contigs |
plotRfHeatmap | Recombination fractions heatmap |
read.fastphase | read fastPHASE format |
sub-.binmapr | Subset method for binmapr objects |
subset.binmapr | subset the binmaprt data |
write.fastphase | write fastPHASE format |
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