enrich_analyzer: All kinds of enrichment Analysis
In xuzhougeng/zgtools: Xu Zhougeng's Toolkits
View source: R/enrich_analyzer.R
Description
All kinds of enrichment Analysis
Usage
1
2
enrich_analyzer(res, pThreshold, goOrg, goKeytype = "TAIR", goOnt = "MF",
keggOrg = "ath", keggKeytype = "kegg", pAdjustMethod = "BH", ...)
Arguments
res
result object from DESeq2 results
pThreshold
p value ajust
goOrg
GO orgnism database
goKeytype
GO keytype
goOnt
one of "BP", "MF", "CC" or "GO"
keggOrg
KEGG orgnism
keggKeytype
KEGG keytype
pAdjustMethod
p value adjust method
xuzhougeng/zgtools documentation built on May 4, 2019, 4:23 p.m.
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View source: R/enrich_analyzer.R
Description
All kinds of enrichment Analysis
Usage
1 2 | enrich_analyzer(res, pThreshold, goOrg, goKeytype = "TAIR", goOnt = "MF",
keggOrg = "ath", keggKeytype = "kegg", pAdjustMethod = "BH", ...)
|
Arguments
res |
result object from DESeq2 results |
pThreshold |
p value ajust |
goOrg |
GO orgnism database |
goKeytype |
GO keytype |
goOnt |
one of "BP", "MF", "CC" or "GO" |
keggOrg |
KEGG orgnism |
keggKeytype |
KEGG keytype |
pAdjustMethod |
p value adjust method |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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