Man pages for yangjl/maizeR
Generate pipelines for maize Genomic and Genetic analysis
| get_file2tab | 'get_file2tab' Scan txt files and extract information into a... |
| hello | Hello, World! |
| plot_mht | 'manhattan plot' |
| plot_stack | 'Stacking plot' |
| runa_bsmap | 'Run bsmap on farm' |
| run_alphaimpute | 'Run GATK Joint Genotype on farm' |
| run_ANGSD | 'Run ANGSD on farm' |
| run_aspera | 'Run Aspera Connect to download from SRA.' |
| run_bismark | 'Run array Bismark job on farm' |
| run_bs2vcf | 'Run bs2vcf job on farm' |
| run_bwamem | 'Run BWA-mem job on farm' |
| run_cutadapt | 'Run cutadapt' |
| run_fastCall | 'Run fastCall on farm' |
| run_fastq_qc | 'Run fastq QC.' |
| run_fermikit | 'Run Fermikit job on farm' |
| run_fq_dump | 'Run fastq-dump.' |
| run_GATK | 'Run GATK job on farm' |
| run_GATK_JointGenotype | 'Run GATK Joint Genotype on farm' |
| run_GenSel4 | 'Run GenSel on farm' |
| run_gerpIBD | 'Run gerpIBD on farm' |
| run_iput | 'Run iget and iput to get/put data from/to iPlant.' |
| run_Rcodes | 'Run array job of R codes' |
| set_array_job | 'Set up array job on farm' |
| set_farm_job | 'Set up one farm job' |
| set_jupyter | 'Set up Jupyter Nodebook' |
