Files in yaoyong02/geno2proteo
Finding the DNA and protein sequences in a list of genomic or proteomic loci
DESCRIPTION
NAMESPACE
NEWS
R/generatingCDSaaFile.R
R/genomicLocToProteinSequence.R
R/genomicLocToWholeDNASequence.R
R/proteinLocsToGenomic.R
R/proteinLocsToProteinSeq.R
exec/DNAseqTranslation_CDS.perl
exec/getDNAseqsFromGenome_loci.perl
inst/extdata/Homo_sapiens.GRCh37.74.dna.chromosome.16.fa_theFirst3p5M.txt.gz
inst/extdata/Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz
inst/extdata/Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz_AAseq.txt.gz
inst/extdata/geneticCode_standardTable_lines.txt
inst/extdata/transId_pfamDomainStartEnd_chr16_Zdomains_22examples.txt
inst/extdata/transId_pfamDomainStartEnd_chr16_Zdomains_22examples_genomicPos.txt
inst/extdata/transId_pfamDomainStartEnd_chr16_Zdomains_22examples_proteinID.txt
inst/unitTests/test_functionsInGeno2proteo.R
man/generatingCDSaaFile.Rd
man/geno2proteo-package.Rd
man/genomicLocToProteinSequence.Rd
man/genomicLocToWholeDNASequence.Rd
man/proteinLocsToGenomic.Rd
man/proteinLocsToProteinSeq.Rd
tests/runTests.R
vignettes/geno2proteoIntroduction.Rnw
