README.md
In yassato/rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects
rNeighborQTL
The "rNeighborQTL" package provides a set of functions to perform a genome scan of neighbor QTL effects.
Installation
CRAN version is available at https://cran.r-project.org/package=rNeighborQTL.
To install the deveper version via GitHub, run devtools::install_github("yassato/rNeighborQTL", repo="master").
Dependency
Note that the rNeighborQTL requires the following R packages.
- gaston
- parallel
- qtl
Release Note
version 1.1.2 (developer version): rebuild using R version 4.0.3; citations updated.
version 1.1.1 (CRAN release version): partial PVEs separated in calc_PVEnei(); plot_nei() refined.
version 1.1.0: calc_neiprob(), eff_neighbor(), scan_neighbor() refactored.
version 1.0.0: Initial version registered in CRAN.
References
Sato Y, Takeda K, Nagano AJ (2021) Neighbor QTL: an interval mapping method for quantitative trait loci underlying plant neighborhood effects. G3; Genes|Genomes|Genetics https://doi.org/10.1093/g3journal/jkab017
yassato/rNeighborQTL documentation built on Dec. 23, 2021, 7:16 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
rNeighborQTL
The "rNeighborQTL" package provides a set of functions to perform a genome scan of neighbor QTL effects.
Installation
CRAN version is available at https://cran.r-project.org/package=rNeighborQTL. To install the deveper version via GitHub, run devtools::install_github("yassato/rNeighborQTL", repo="master").
Dependency
Note that the rNeighborQTL requires the following R packages. - gaston - parallel - qtl
Release Note
version 1.1.2 (developer version): rebuild using R version 4.0.3; citations updated. version 1.1.1 (CRAN release version): partial PVEs separated in calc_PVEnei(); plot_nei() refined. version 1.1.0: calc_neiprob(), eff_neighbor(), scan_neighbor() refactored. version 1.0.0: Initial version registered in CRAN.
References
Sato Y, Takeda K, Nagano AJ (2021) Neighbor QTL: an interval mapping method for quantitative trait loci underlying plant neighborhood effects. G3; Genes|Genomes|Genetics https://doi.org/10.1093/g3journal/jkab017
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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