Description Usage Arguments Details Value Examples
Compares two sets of mass spectrometry features corresponding to a single MS run. This can be used to compare the results of different feature finding algorithms that have been run on the same raw dataset.
1 | compareFeatures(rawDataFilePath, featureFilePath1, featureFilePath2)
|
rawDataFilePath |
The location of the mzML raw data file, as a string. |
featureFilePath1 |
The location of the first featureXML file, as a string. |
featureFilePath2 |
The location of the second featureXML file, as a string. |
A short summary, including the number of features that were found to be common to both sets of features, as well as statistical values such as recall, precision, and F_1 score, will be printed to the terminal.
This function may take a while to run.
Nothing. A basic analysis is printed to the screen instead.
1 2 3 4 5 6 | ## Not run:
compareFeatures("inst/extdata/20190122_HeLa_QC_Slot1-47_1_3228_800-810.mzML",
"inst/extdata/featureSetA.featureXML",
"inst/extdata/featureSetB.featureXML")
## End(Not run)
|
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