MNPpreprocessIllumina: Modified version of the preprocessIllumnia normalization...
In yeswzc/cnsTumorMNN: cnsTumorMNN package

MNPpreprocessIllumina

R Documentation

Modified version of the preprocessIllumnia normalization function

Description

MNPpreprocessIllumina works with single samples. Normalize to 10,000 instead of average normalization control intensity of first/reference sample

Usage

MNPpreprocessIllumina(
  rgSet,
  bg.correct = TRUE,
  normalize = c("controls", "no"),
  ref = 10000
)

MNPnormalize.illumina.control(rgSet, ref = 10000)

Arguments

`rgSet`	an object of class RGset
`bg.correct`	background correction
`normalize`	either "controls" or "no"
`ref`	reference intensity 10,000
`RGset`	object of class RGset

Details

See preprocessIllumnia for more details.

Functions

MNPnormalize.illumina.control: Modified version of normalize.illumina.control called byMNPpreprocessIllumina

MNPnormalize.illumina.control works with single samples. Normalize to 10,000 instead of average normalization control intensity of first/reference sample Called by MNPpreprocessIllumina