LCDBtest: Sample DB for LC-MS annotation

LCDBtestR Documentation

Sample DB for LC-MS annotation

Description

This database has been generated using the exptable dataset to process the data included in the metaMSdata package.

Usage

data(LCDBtest)

Format

LCDBtest is a list with three elements:

Reftable

The initial table used to generate the DB.

Info

Some info on the DB: date of creation, and settings used.

DB

A data.frame containing the actual information. See the details section.

Details

The DB data.frame contains the following fields:

ChemSpiderID

The Chem spider identifier for the compound.

compound

A human-readable name for the compound.

adduct

The output of the CAMERA annotation of the standard file.

isotopes

The output of the CAMERA annotation of the standard file.

mz, rt

the mz and rt values.

maxo

the maxo intensity value for a given feature in the injection.

validated

a string which defines the origin of a specific feature.

Author(s)

Pietro Franceschi

See Also

createSTDdbLC, exptable, FEMsettings


yguitton/metaMS documentation built on Feb. 27, 2023, 11:45 p.m.