getAlleleFrequencies: Compute allele frequencies.
In yhai943/BLMM: Bayesian linear mixed model with multiple random effects

Description Usage Arguments Details Value Examples

View source: R/getAlleleFrequencies.R

Compute allele frequenciesGenotypic

1	getAlleleFrequencies(snp)

snp

Alleles encoded as 0, 1 or 2 as a number

If AA, AB,and BB are the frequencies of the three genotypes at a locus with two alleles, allele frequency is estimated as (2pp+pq) / (2N), where p is the frequency of A-allele; q is the frequency of the B-allele in the sample; N is the number of samples.

pred a vector of predictions