README.md

In yingstat/intePareto: Integrative Analysis of RNA-Seq and ChIP-Seq Data

intePareto

The package intePareto will be updated and maintained here not on CRAN anymore.

intePareto is designed to prioritize genes with consistent changes in RNA-Seq and ChIP-Seq data of different histone modifications betweeen different conditions using Pareto optimization.

The intePareto workflow starts with RNA-Seq and ChIP-Seq data for two different cell types or conditions. The ChIP-Seq data will in general comprise information on several histone modifications with activating or repressing function. The end product of intePareto is a list of genes prioritized according to congruence of changes of gene expression and histone modifications.

The detailed example of using intePareto is shown in this case study example.

yingstat/intePareto documentation built on Feb. 8, 2021, 2:17 a.m.