CommPath-class: To define the CommPath object and the key slots

In yingyonghui/Commpath:

To define the CommPath object and the key slots

Description

To define the CommPath object and the key slots

Slots

data

normalized expression matrix

cell.info

vector of cell labels

meta.info

list of important parameters used during the analysis

LR.marker

data frame of the differential expression test result of ligands and receptors

interact

list containing information of LR interaction among clusters

interact.filter

list containing information of filtered LR interaction among clusters

pathway

list containing information of pathways associated with ligands and receptors

pathway.net

list containing the integrated information of the statistics of LR interactions and associated pathways

yingyonghui/Commpath documentation built on June 9, 2025, 5:51 a.m.