Description Usage Arguments Value Examples
Display basic information of regions of genome data group by Sample or Chromosome
1 | RegionsInfoPlot(Regions, group = "Sample", statatisic = "Mean")
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group |
a character specify group option, current only support 'Sample' and 'Chromosome'. |
region |
a data frame contains information of any experiments that result in regions of the genome showing "enrichment" which means above p-value threshold. |
statistic |
a character specify basic statistics option, current only support 'Mean' and 'Median'. |
ggplot graphs.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | ## Not run:
library(ACME)
datdir <- system.file('extdata',package='ACME')
fnames <- dir(datdir)
example.agff <- read.resultsGFF(fnames,path=datdir)
calc <- do.aGFF.calc(example.agff,window=1000,thresh=0.95)
Regions <- findRegions(calc)
#example 1 mean p values of regions above p value threshhold grouped by samples
RegionsInfoPlot(Regions)
#example 2 mean p values of regions above p value threshhold grouped by Chromosomes
RegionsInfoPlot(Regions,group = "Chromosome", statatisic = "Mean")
#example 2 mean p values of regions above p value threshhold grouped by Chromosomes
RegionsInfoPlot(Regions,group = "Sample", statatisic = "Mean")
## End(Not run)
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