This package implements the PhenoGraph algorithm, which first creates an adjacancy matrix according to k-nearest neighbours, and then uses the Louvain algorithm to identify "communities" by maximizing the modularity. The algorithm appeared in the paper Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis, Levine, Jacob H. et al. Cell , Volume 162 , Issue 1 , 184 - 197
Package details |
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Author | Yishai Shimoni |
Maintainer | Yishai Shimoni <shimoni.yishai@gmail.com> |
License | BSD |
Version | 0.5 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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