yishaishimoni/phenoClust: Find clusters by network modularity

This package implements the PhenoGraph algorithm, which first creates an adjacancy matrix according to k-nearest neighbours, and then uses the Louvain algorithm to identify "communities" by maximizing the modularity. The algorithm appeared in the paper Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis, Levine, Jacob H. et al. Cell , Volume 162 , Issue 1 , 184 - 197

install.packages("remotes")
remotes::install_github("yishaishimoni/phenoClust")