This package implements the PhenoGraph algorithm, which first creates an adjacancy matrix according to knearest neighbours, and then uses the Louvain algorithm to identify "communities" by maximizing the modularity. The algorithm appeared in the paper DataDriven Phenotypic Dissection of AML Reveals Progenitorlike Cells that Correlate with Prognosis, Levine, Jacob H. et al. Cell , Volume 162 , Issue 1 , 184  197
Package details 


Author  Yishai Shimoni 
Maintainer  Yishai Shimoni <[email protected]> 
License  BSD 
Version  0.5 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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