yishaishimoni/phenoClust: Find clusters by network modularity

This package implements the PhenoGraph algorithm, which first creates an adjacancy matrix according to k-nearest neighbours, and then uses the Louvain algorithm to identify "communities" by maximizing the modularity. The algorithm appeared in the paper Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis, Levine, Jacob H. et al. Cell , Volume 162 , Issue 1 , 184 - 197

Getting started

Package details

AuthorYishai Shimoni
MaintainerYishai Shimoni <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
yishaishimoni/phenoClust documentation built on Dec. 15, 2017, 3:05 a.m.