This package implements the PhenoGraph algorithm, which first creates an adjacancy matrix according to k-nearest neighbours, and then uses the Louvain algorithm to identify "communities" by maximizing the modularity. The algorithm appeared in the paper Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis, Levine, Jacob H. et al. Cell , Volume 162 , Issue 1 , 184 - 197
|Maintainer||Yishai Shimoni <[email protected]>|
|Package repository||View on GitHub|
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