Man pages for yishaishimoni/phenoClust
Find clusters by network modularity
| deltaModularity | Change in modularity by moving a node |
| hadamard | Create a matrix of hadamard indices from a directed adjacancy... |
| louvain | Louvain algorithm |
| louvainStep | Run a single step of the Louvain algorithm |
| modularity | Calculate modularity of a weighted graph matrix |
| phenoClust | Cluster samples by maximizing graph modularity |
| phenoGraph | Find clusters by network modularity |
| topMax | Find the Nth largest / smallest value |
