yliu433/scZINB: Graphical model estimation for zero-inflated count data

Graphical model estimation using zero-inflated negative binomial model for single cell RNA-seq data. The method contains two steps: 1. estimate the moral graph using the neighborhood selection based on the jointly penalized ZINB regression; 2. estimate the skeleton of the graphical model using a modified PC-algorithm.

Getting started

Package details

AuthorYang Liu, Jenny Yang
MaintainerYang Liu <yliu433@gmail.com>
LicenseGPL
Version1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("yliu433/scZINB")
yliu433/scZINB documentation built on Nov. 30, 2020, 9:07 p.m.