README.md

In youngser/VN: Vertex Nomination via Seeded Graph Matching

Vertex Nomination via Seeded Graph Matching

Carey E. Priebe, Youngser Park, Heather Patsolic, Vince Lyzinski Johns Hopkins University

Background

• The latest drafts of our papers are:

• Donniell E. Fishkind, Sancar Adali, Heather G. Patsolic, Lingyao Meng, Vince Lyzinski, C.E. Priebe, "Seeded Graph Matching," submitted, 2017. (codes and plots)
• Heather G. Patsolic, Youngser Park, Vince Lyzinski, C.E. Priebe, "Vertex Nomination Via Local Neighborhood Matching," submitted, 2017. (codes and plots)

• The slide sets are here (long) and here (short).

Here we describe our approach to both the simulations and the illustrative experiments, which allows the same code to be used to address a real problem in anger (when we don’t know any truth except the VOI $x$ and some seeds $S \leftrightarrow S'$). If it’s a simulation or illustrative experiment: (1) generate $G$ and $G'$ with some shared vertices and some unshared vertices, or start with real data $G$ and $G'$ with a collection of known shared vertices and some unknown or unshared vertices, and (2) randomly pick VOI $x$ and some number of seeds $S\leftrightarrow S'$ from amongst the shared vertices; then embark on our procedure described below. If it’s a real problem, with given VOI $x$ and some seeds $S \leftrightarrow S'$, then embark immediately on our procedure described below.

R Package

The latest R source package can be installed via github as

require(devtools)
devtools::install_github("youngser/VN")

Demo

A simulation as well as a real data experiment are provided as a vignette document in the package.

youngser/VN documentation built on July 18, 2020, 12:48 p.m.