Files in ytakemon/GINIR

Genetic inteRaction and EssenTiality neTwork mApper

.github/ISSUE_TEMPLATE/recommendations-.md DepMap_data_versions/20Q1/pre-processing/Data_formatting.R DepMap_data_versions/20Q1/pre-processing/Pancan_coessential_precomputing.R DepMap_data_versions/21Q4/pre-processing/Data_formatting.R DepMap_data_versions/21Q4/pre-processing/Data_retreival.R DepMap_data_versions/21Q4/pre-processing/Pancan_coessential_precomputing.R DepMap_data_versions/22Q1/pre-processing/Data_formatting.R DepMap_data_versions/22Q1/pre-processing/Data_retreival.R DepMap_data_versions/22Q1/pre-processing/Pancan_coessential_precomputing.R DepMap_data_versions/23Q2/pre-processing/Data_formatting.R DepMap_data_versions/23Q2/pre-processing/Data_retreival.R DepMap_data_versions/23Q2/pre-processing/Pancan_coessential_precomputing.R DepMap_data_versions/23Q4/pre-processing/Data_formatting.R DepMap_data_versions/23Q4/pre-processing/Data_retreival.R DepMap_data_versions/23Q4/pre-processing/Pancan_coessential_precomputing.R LICENSE.md NEWS.md R/Append_perm_pval.R R/GI_screen.R R/GI_screen_perms.R R/Pval_perm_adjust.R R/annotate_df.R R/coessential_map.R R/common_coefs_coess.R R/common_coefs_prot.R R/common_coefs_rna.R R/download_example_data.R R/extract_prot.R R/extract_rna.R R/get_inflection_points.R R/get_names.R R/list_cancer_type.R R/list_mutations.R R/plot_coess.R R/plot_screen.R R/protein_coexpress.R R/rna_coexpress.R R/select_cell_lines.R R/utils-pipe.R R/zzz.R README.Rmd README.md Singularity/ARID1A_tutorial.R man/Append_perm_pval.Rd man/GI_screen.Rd man/GI_screen_perms.Rd man/Pval_perm_adjust.Rd man/annotate_df.Rd man/coessential_map.Rd man/common_coefs_coess.Rd man/common_coefs_prot.Rd man/common_coefs_rna.Rd man/download_example_data.Rd man/extract_prot.Rd man/extract_rna.Rd man/get_GeneNameID.Rd man/get_inflection_points.Rd man/list_cancer_types.Rd man/list_mutations.Rd man/pipe.Rd man/plot_coess.Rd man/plot_screen.Rd man/protein_coexpress.Rd man/rna_coexpress.Rd man/select_cell_lines.Rd tests/testthat.R tests/testthat/test-GI_screen.R tests/testthat/test-extract_prot.R tests/testthat/test-extract_rna.R tests/testthat/test-get_DepMapID.R tests/testthat/test-get_GeneNameID.R tests/testthat/test-list_cancer_types.R tests/testthat/test-list_mutations.R tests/testthat/test-select_cell_lines.R vignettes/GRETTA_vignette.Rmd