README.md

In ytdai/gvmap: An Improved Function to Plot Heatmap of Genomic Data

gvmap package

An Improved Function to Plot Heatmap of Genomic Data

DESCRIPTION

Gvmap is an R package that can integrate multiple heatmap and legend figures.

INSTALLATION

Gvmap depends on several R packages. They are configr, dendextend, matrixStats, easySVG, rsvg, and stringr.

You can install gvmap through github or source code.

Github

# Install the cutting edge development version from GitHub:
# install.packages("devtools")

# install easySVG
devtools::install_github("ytdai/easySVG")

# install other packages
install.packages("configr")
install.packages("dendextend")
install.packages("matrixStats")
install.packages("rsvg")
install.packages("stringr")

devtools::install_github("ytdai/gvmap")

Zip/Tarball

1. Download the appropriate zip file or tar.gz file from Github
2. Unzip the file and change directories into the gvmap directory
3. Run R CMD INSTALL pkg

Plot

Run by default paramter

Only one heatmap

Only legend

Add sample span and heatmap span

End

ytdai/gvmap documentation built on June 7, 2019, 11:46 p.m.