getBC: Get the details of the bicluster

In yu-shang/Qtest: QUBIC is a Qualitative BiCluster Algorithms for Expression Data Analysis

Description

getBC is a function to get the bicluster of QUBIC.
getBC will return the gene names and condiction names of the bicluster you give.

thisBC = getBC(results, ...);

Arguments

results	The result of QUBIC.
numBC	Which bicluster you want to see.

Details

results = qubic(data, file = "rQUBIC", q = 0.06, c = 0.95, f = 1, k = 2, r = 1, o = 100, d = "F");
thisBC = getBC(results, numBC = 1);

Value

The R function, getBC returns an object of list:

genes	The gene names in this bicluster.
conds	The condiction names in this bicluster.
num_gene	The number of genes in this bicluster.
num_cond	The number of condictions in this bicluster.

Author(s)

Qin Ma (UGA) <[e-mail]>
Yu Shang (JLU & UGA)<[e-mail]>
Ying Xu (JLU & UGA) <[e-mail]>

Maintainer: Yu Shang (JLU & UGA)<[e-mail]>

References

Li, Ma, et al. (2009) QUBIC: a qualitative biclustering algorithm for analyses of gene expression data Nucleic Acids Research 07/2009 37(15):e101
https://code.google.com/p/qubic-biclustering/

Zhou, Ma, et al. (2012) QServer: a biclustering server for prediction and assessment of co-expressed gene clusters PLoS ONE 01/2012 7(3):e32660

See Also

QUBIC-package QUBIC-method

Examples

data(toy);
# load a discrete data named toy

results = qubic(toy, file = "toy", d = "T");
# run qubic to deal with the discrete data

thisBC = getBC(results, numBC = 3);
# get the gene and condiction names of the 3rd bicluster.

yu-shang/Qtest documentation built on May 4, 2019, 6:35 p.m.