Man pages for yuanfang90/LNMVGA
Cluster microbiome / compositional data using a mixture of logistic-normal multinomial models
| elbo_fun | An internal function to calculate the expected log sum... |
| generate_data | Function for generating data from the mixture of... |
| initialize_fun | A function for initialization. |
| LNM.clust | Function for the Clustering Algorithm with specific number of... |
| LNMMM | Function for the Clustering Algorithm |
| loglik.approx | A function to calculate the approximated log-likelihood |
| map | A Map Function |
| mk_fun | A function for newton update of m This function calculate the... |
| mk_fun.jacobian | A function for newton update of m This function calculate the... |
| mst_fun | A function to update the model parameters. |
| newton_up_m | A function for newton update of m This function performs... |
| newton_up_v | A function for newton update of V This function performs... |
| unmap | An Unmap Function |
| varpar_fun | A function to update the variational parameters. |
| vk_fun | A function for newton update of V This function calculate the... |
| vk_fun.prime | Another function for newton update of V This function... |
| z_fun | A function to calculate posterior clustering probabilities |
