README.md

In yuexyin/FinalProject_Yin: Use R to Analysi Electrophysiology Data

FinalProjectYin

The goal of FinalProjectYin is to make the data analysis of electrophysiology data from an experiment in my lab easier and faster.

Installation

You can install the released version of FinalProjectYin from CRAN with:

install.packages("FinalProjectYin")

And the development version from GitHub with:https://github.com/yuexyin/FinalProject_Yin

# install.packages("devtools")
devtools::install_github("yuexyin/FinalProject_Yin")

Example

This is a basic example which shows you how to solve a common problem:

ephys <- read.csv("Ephys_Yin.csv", header = TRUE)

head(ephys1 <- ephysfilter(ephys))
#>   Cell.ID Animal.ID Treatment y.frac z.plane Start.Resistance End.Resistance
#> 1  yy0047    817145   alcohol  0.565      42               19             19
#> 2  yy0049    817150     water  0.448      45               24             24
#> 3  yy0050    817150     water  0.463      45               15             14
#> 4  yy0051    817150     water  0.434      45               13             13
#> 5  yy0052    817150     water  0.507      43               20             23
#> 6  yy0053    817150     water  0.500      43               20             21
#>   Resistance.difference Voltage.threshold.mV Current.Threshold..pA.
#> 1            0.00000000             -42.1602                    100
#> 2            0.00000000             -38.6890                    100
#> 3            0.06666667             -37.2443                    100
#> 4            0.00000000             -33.9185                    250
#> 5            0.15000000             -32.0884                    100
#> 6            0.05000000             -35.3299                    100

StatsTable(ephys1, "alcohol", "water", "Cell.ID", "Voltage.threshold.mV")
#>                  Mean      STD
#> Group1stats -43.04866 4.489839
#> Group2stats -37.76110 3.986581

threshttest("Voltage.threshold.mV", ephys1)
#> [1] 0.01275359

What is special about using README.Rmd instead of just README.md? You can include R chunks like so:

You’ll still need to render README.Rmd regularly, to keep README.md up-to-date.

You can also embed plots, for example:

In that case, don’t forget to commit and push the resulting figure files, so they display on GitHub!

yuexyin/FinalProject_Yin documentation built on Jan. 1, 2021, 1:47 p.m.