calcBamNormFactors: Calculate normalization factors for visualization of BAM...
In yuifu/millefy: Make millefy plot with single-cell RNA-seq data

Description Usage Arguments Value Examples

View source: R/millefy-bamImport.R

Calculate normalization factors for visualization of BAM files

1	calcBamNormFactors(bam_files, scaleFactor = 10^6)

`bam_files`	A character vector containing paths to BAM files
`scaleFactor`	A numeric vector of normalization factors (1/(total mapped reads)*scaleFactor)

bamNormFactors numeric vector

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# Gene annotation track (For faster performance, try to use \code{dt_gtf} paramter)
bam_files = Sys.glob(file.path(system.file("extdata/bam", package="millefy"), "*.bam"))
normFactors = calcBamNormFactors(bam_files)