Files in yujijun/crisprverfied
This package is used for CRISPR SCREEN paper verification
.Rbuildignore
.Rhistory
.gitignore
CRISPR_output_plot enriment_df.txt
DESCRIPTION
NAMESPACE
R/Gene_signature_enrichment.R
R/Stoufferzscore.R
R/Volcano.R
R/rankplot.R
R/rankplot_singlegene.R
R/singlegenebarplot.R
R/volcanodisplay.R
R/volcanodisplay_multigene.R
R/volcanodisplay_singlegene.R
R/volcanodisplayreplication.R
README.md
crisprproject1.Rproj
data/DGElist_zexian.txt
data/Gene_list_27.txt
data/ImmuneScreens_Annotation.csv
data/LFC.txt
data/LFC_maxscale.txt
data/LFC_original.txt
data/LFC_scale(nocenter).txt
data/ProgenitorT_successful_differentition_activation_signature.csv
data/QC_meta.txt
data/RRAscore.txt
data/RRAscore_original.txt
data/RRAscore_scale(nocenter).txt
data/nonessential_ctrl_genelist_350.txt
data/postive_ctrl_genelist.txt
man/Stoufferzscore.Rd
man/Volcano.Rd
man/geneset_enrichment.Rd
man/rankplot.Rd
man/rankplot_singlegene.Rd
man/singlegenebarplot.Rd
man/volcanodisplay.Rd
man/volcanodisplaymultigene.Rd
man/volcanodisplayrep.Rd
man/volcanodisplaysinglegene.Rd
projects.record.md
scripts/CARM1_figure_refine.R
scripts/Carm1_refine_v2.R
scripts/File_preprocess.R
scripts/Generate_QC_matrix.R
scripts/Liu_preprocessing.R
scripts/Manguso_2017_nature_preprocessing.R
scripts/RankView_genesignature.R
scripts/Rankplot.R
scripts/barplot_singlegene.R
scripts/batchrun_mageck.R
scripts/geneset_enrichment.R
scripts/interpret_of_CRISPR_SCREEN.R
scripts/main_paper_recurrence.R
scripts/main_replication.R
scripts/volcanoplot_Carm1.R
scripts/volcanoplot_liye27list.R
scripts/xiaoman.R
