R/README.md

In yujijun/neoantigenML: Machine Learning Methods for Neoantigen Filtering

1. Environment

   sessionInfo() R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS 10.16

Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] parallel stats graphics grDevices utils datasets methods base

other attached packages: [1] NeoantigenML_0.0.0 foreach_1.5.1 snow_0.4-4 data.table_1.14.2 [5] forcats_0.5.1 stringr_1.4.0 dplyr_1.0.7 purrr_0.3.4 [9] readr_2.1.1 tidyr_1.1.4 tibble_3.1.6 ggplot2_3.3.5 [13] tidyverse_1.3.1 corrplot_0.92 devtools_2.4.3 usethis_2.1.5

loaded via a namespace (and not attached): [1] Rcpp_1.0.7 lubridate_1.8.0 prettyunits_1.1.1 ps_1.6.0 assertthat_0.2.1 [6] rprojroot_2.0.2 utf8_1.2.2 cellranger_1.1.0 R6_2.5.1 backports_1.4.1 [11] reprex_2.0.1 httr_1.4.2 pillar_1.6.4 rlang_0.4.12 readxl_1.3.1 [16] rstudioapi_0.13 callr_3.7.0 desc_1.4.0 munsell_0.5.0 broom_0.7.10 [21] compiler_4.0.2 modelr_0.1.8 pkgconfig_2.0.3 pkgbuild_1.3.1 doSNOW_1.0.19 [26] tidyselect_1.1.1 codetools_0.2-18 fansi_0.5.0 tzdb_0.2.0 crayon_1.4.2 [31] dbplyr_2.1.1 withr_2.4.3 grid_4.0.2 jsonlite_1.7.2 gtable_0.3.0 [36] lifecycle_1.0.1 DBI_1.1.2 magrittr_2.0.1 scales_1.1.1 stringi_1.7.6 [41] cli_3.1.0 cachem_1.0.6 pbapply_1.5-0 fs_1.5.2 remotes_2.4.2 [46] testthat_3.1.1 xml2_1.3.3 ellipsis_0.3.2 generics_0.1.1 vctrs_0.3.8 [51] iterators_1.0.13 tools_4.0.2 glue_1.6.0 hms_1.1.1 processx_3.5.2 [56] pkgload_1.2.4 fastmap_1.1.0 colorspace_2.0-2 sessioninfo_1.2.2 rvest_1.0.2 [61] memoise_2.0.1 haven_2.4.3

User could install all related by 00_InstallPackage.R under ./main_running_v3 folder

yujijun/neoantigenML documentation built on March 20, 2022, 11:59 p.m.