calculateKL_Dirichlet: Calculate a modified KL score that uses absolute value of the...
In yuliangwang/perturb.met: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Description
Calculate a modified KL score that uses absolute value of the ratios
It will detect cases where the relative proportion did not change, but the total amount of expressed enzymes changed.
Usage
1
calculateKL_Dirichlet(x, y)
Arguments
x
expression vector for the reference/baseline condition, in FPKM, or TPM value - normalized for depth and gene length.
y
expression vector for the perturbed/treated condition, in FPKM, or TPM value - normalized for depth and gene length.
Value
KL value denoting the difference between the distribution of values in x and y
yuliangwang/perturb.met documentation built on Jan. 21, 2021, 12:27 a.m.
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Description Usage Arguments Value
Description
Calculate a modified KL score that uses absolute value of the ratios It will detect cases where the relative proportion did not change, but the total amount of expressed enzymes changed.
Usage
1 | calculateKL_Dirichlet(x, y)
|
Arguments
x |
expression vector for the reference/baseline condition, in FPKM, or TPM value - normalized for depth and gene length. |
y |
expression vector for the perturbed/treated condition, in FPKM, or TPM value - normalized for depth and gene length. |
Value
KL value denoting the difference between the distribution of values in x and y
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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