README.md

In yunfantang/PhyloScan: Phylogenetic Scan Test for Microbiome Data

PhyloScan: Phylogenetic Scan Test for Microbiome Data

Yunfan Tang, [e-mail]

This R package conducts cross-group hypothesis testing of microbiome compositions using triplet scan statistics.

Note: please use HMP package version >= 1.5.1.

Reference

• Tang, Y., Ma, Li. and Nicolae, D. L. (2017). A Phylogenetic Scan Test on Dirichlet-Tree Multinomial Model for microbiome data. https://arxiv.org/abs/1610.08974 [stat.AP].
• Wang, T. and Zhao, H. (2017). A Dirichlet-tree multinomial regression model for associating dietary nutrients with gut microorganisms. Biometrics.

yunfantang/PhyloScan documentation built on May 4, 2019, 7:44 p.m.