In zanbi/DLMtool: Data-Limited Methods Toolkit

if (params$tabs) {
  cat('### Depletion and Discard Mortality {.tabset .tabset-fade .tabset-pills}' )
} else {
  cat('### Depletion and Discard Mortality')
}
Pars <- params$Pars
dd <- dim(Pars$M_ageArray)
nsim <- dd[1]
maxage <- dd[2]

nsamp <- length(params$its)

Sampled Parameters

Histograms of r nsim simulations of depletion (spawning biomass in the last historical year over average unfished spawning biomass; D) and the fraction of discarded fish that are killed by fishing mortality (Fdisc), with vertical colored lines indicating r nsamp randomly drawn values.

par(mfrow=c(1,2))
hist2(Pars$D, col=params$plotPars$col, axes=params$plotPars$axes, main="Depletion (D)", breaks=params$plotPars$breaks)
abline(v=Pars$D[params$its], col=1:nsamp, lwd=params$plotPars$lwd)
axis(side=1) 

hist2(Pars$Fdisc, col=params$plotPars$col, axes=params$plotPars$axes, main="Fdisc", breaks=params$plotPars$breaks)
abline(v=Pars$Fdisc[params$its], col=1:nsamp, lwd=params$plotPars$lwd)
axis(side=1)