moca7k: 7500 cells from mouse embryos

In zdebruine/LSMF: Least squares matrix factorization

Description

This dataset is ~95

Usage

data(moca7k)

Format

dgCMatrix with features (genes) as rows and samples (cells) as columns

Details

The dataset was obtained as follows:

1. Pre-processed counts were downloaded from the Mouse Organogenesis Cell Atlas figshare site ("gene_counts_cleaned.rds")

2. Cells from E13.5 embryos were subsetted

3. Protein-coding genes were subsetted (17560 features out of original 26183)

4. Cells were subsetted which had non-zero counts for >500 genes (108825 cells out of original 241800)

5. Genes were subsetted which had non-zero counts in at least 0.5

6. 7500 cells were randomly selected

Source

MOCA figshare

References

Cao et al. (2019) Nature (PubMed)

zdebruine/LSMF documentation built on Jan. 1, 2021, 1:50 p.m.